Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs17096107 | chr14:59800036 | G/C | 1.86E-8 | 489 | 16.3 | 14.1 | 5.45 | KM Plot |
| THCA | rs17096117 | chr14:59805355 | C/G | 1.87E-8 | 488 | 16.3 | 14.7 | 5.45 | KM Plot |
| THCA | rs17096126 | chr14:59806629 | T/G | 1.87E-8 | 488 | 16.3 | 14.7 | 5.45 | KM Plot |
| THCA | rs17096197 | chr10:81808184 | T/C | 0.000254 | 487 | 16.08 | 15.87 | 11.73 | KM Plot |
| THCA | rs17098169 | chr10:81816134 | C/T | 0.000255 | 490 | 11.73 | 15.77 | 16.23 | KM Plot |
| THCA | rs17098720 | chr10:81840236 | A/G | 0.000146 | 487 | 16.2 | 15.98 | 9.77 | KM Plot |
| THCA | rs17100672 | chr1:77988371 | G/T | 1.23E-5 | 482 | 15.93 | 15.23 | 25.7 | KM Plot |
| THCA | rs17102265 | chr14:24707180 | A/G | 1.34E-6 | 490 | 10.65 | 16.47 | 15.87 | KM Plot |
| THCA | rs17103397 | chr14:36031447 | T/C | 5.7E-6 | 485 | 16.08 | 16.37 | 8.33 | KM Plot |
| THCA | rs17103477 | chr14:36188605 | A/G | 5.07E-6 | 490 | 8.33 | 16.35 | 15.93 | KM Plot |
| THCA | rs17106604 | chr14:78379156 | A/G | 5.66E-5 | 490 | 14.03 | 16.57 | 15.7 | KM Plot |
| THCA | rs17107449 | chr10:81715696 | C/T | 0.0002 | 489 | 15.97 | 15.9 | 13.5 | KM Plot |
| THCA | rs17109512 | chr10:100127551 | C/T | 1.14E-11 | 490 | 15.77 | 17.7 | 5.8 | KM Plot |
| THCA | rs17109539 | chr10:100131458 | G/A | 0 | 485 | 15.93 | 16.15 | 5.8 | KM Plot |
| THCA | rs17112401 | chr10:98855465 | A/G | 8.58E-6 | 490 | 11.58 | 15 | 16.4 | KM Plot |